track_wkflow_samples: Track the number of reads (= sequences), samples and cluster...

In adrientaudiere/MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis

Track the number of reads (= sequences), samples and cluster (e.g. ASV) for each sample

Description

Contrary to track_wkflow(), only phyloseq object are possible. More information are available in the manual of the function track_wkflow()

Usage

track_wkflow_samples(list_pq_obj, ...)

Arguments

list_pq_obj	(required): a list of object passed on to track_wkflow() Only phyloseq object will return value because information of sample is needed
...	Other args passed on to track_wkflow()

Value

A list of dataframe. cf track_wkflow() for more information

Author(s)

Adrien Taudière

Examples

tree_A10_005 <- subset_samples(data_fungi, Tree_name == "A10-005")
if (requireNamespace("pbapply")) {
  track_wkflow_samples(tree_A10_005)
}

adrientaudiere/MiscMetabar documentation built on Oct. 13, 2024, 9:42 p.m.