| CompCCAT | Correlation of Connectome And Transcriptome |
| CompSRana | Computes potency estimates of single-cells using the... |
| dataChu | scRNA-Seq C1 Fluidigm data from Chu et al |
| dataLiver | scRNA-Seq data from Yang et al |
| DoIntegPPI | Integration of gene expression matrix and PPI network |
| InferDMAPandRoot | Infers Diffusion Map, Root-state and root-cell |
| InferPotencyStates | Infer distinct potency states from the single cell potency... |
| net13Jun12 | PPI network from Pathway Commons v1 |
| net17Jan16 | PPI network from Pathway Commons-v2 |
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