Files in afsc-gap-products/coldpool
AFSC/RACE Groundfish Assessment Program EBS and NBS temperature products
.Rbuildignore
.github/workflows/secretScan.yml
.gitignore
0_update_cold_pool_index.R
2024_cold_pool_index.Rmd
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS
R/compare_cpa_station_filter.R
R/cpa_from_raster.R
R/data.R
R/data2raster.R
R/estimate_anisotropy.R
R/estimate_z_expansion.R
R/figs.R
R/get_data.R
R/interpolate_variable.R
R/interpolation_wrapper.R
R/kriging_cv.R
R/loocv_2.R
R/loocv_gear_temp.R
R/make_loocv_summary.R
R/make_rank_table.R
R/make_tm_product_figs.R
R/make_var_by_method.R
R/plot_loocv_rmse.R
R/utils.R
R/vgm_fn.R
README.md
analysis/Compare_interpolation_methods.Rmd
analysis/cold_pool_for_regional_models.Rmd
analysis/cold_pool_for_regional_models.html
analysis/dissolved_oxygen_2024/data/GAPCTD_2023_EBS.nc
analysis/dissolved_oxygen_2024/data/GAPCTD_2023_EBS.rds
analysis/dissolved_oxygen_2024/data/GAPCTD_2024_EBS.nc
analysis/dissolved_oxygen_2024/data/GAPCTD_2024_EBS.rds
analysis/dissolved_oxygen_2024/dissolved_oxygen_map_sep2024.R
analysis/dissolved_oxygen_2024/plots/2024_dissolved_oxygen_map.png
analysis/recalculate_temperature.R
analysis/resample_probability/fit_col1516_temp.png
analysis/resample_probability/fit_cpa.png
analysis/resample_probability/resample_prob.R
analysis/resample_probability/timeseries_col1516_temp.png
analysis/resample_probability/timeseries_cpa.png
analysis/temp3d/R/00_analysis.R
analysis/temp3d/R/01_get_data.R
analysis/temp3d/R/02_setup_crossvalidation_data.R
analysis/temp3d/R/03_interpolate_temperature_2d.R
analysis/temp3d/R/03_interpolate_temperature_2d_spmodel.R
analysis/temp3d/R/04_plot_2d_cross_validation_results.R
analysis/temp3d/R/05_estimate_vertical_expansion.R
analysis/temp3d/R/fit_anisotropy_new.R
analysis/temp3d/R/test_3d.R
analysis/temp3d/R/test_aniso.R
analysis/temp3d/R/test_anisotropy_zexpansion.R
analysis/temp3d/R/test_expansion_estimation.R
analysis/temperature_timeseries_comparison.R
assets/0_update_cold_pool_index.Rmd
assets/B10K-K20_CORECFS_coldpool.nc
assets/GAPCTD_2021_EBS.nc
assets/GAPCTD_2022_EBS.nc
assets/GAPCTD_2023_EBS.nc
assets/GAPCTD_2024_EBS.nc
assets/bottom_temperature.rds
assets/ebs_bttemp_plus_nw_lt200m.rds
assets/ebs_bttemp_standard_lt200m.rds
assets/ebs_nbs_temperature_full_area.csv
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assets/index_hauls_temperature_data.csv
assets/mean_temperature.rds
assets/surface_temperature.rds
assets/survey_replicates_B10K-K20_CORECFS.csv
assets/temperature.nc
coldpool_refs.bib
data/cold_pool_index.rda
data/cpa_pre2021.rda
data/ebs_bottom_salinity.rda
data/ebs_bottom_temperature.rda
data/ebs_proj_crs.rda
data/ebs_surface_temperature.rda
data/nbs_ebs_bottom_salinity.rda
data/nbs_ebs_bottom_temperature.rda
data/nbs_ebs_surface_temperature.rda
data/nbs_mean_temperature.rda
fish-and-fisheries.csl
inst/CITATION
inst/extdata/B10K_lte200m_polygon.dbf
inst/extdata/B10K_lte200m_polygon.shp
inst/extdata/B10K_lte200m_polygon.shx
inst/extdata/cpa_areas2019.csv
inst/extdata/gapctd/GAPCTD_2021_EBS.rds
inst/extdata/gapctd/GAPCTD_2022_EBS.rds
inst/extdata/gapctd/GAPCTD_2023_EBS.rds
inst/extdata/gapctd/GAPCTD_2024_EBS.rds
inst/extdata/old_method_cpa_temperature_2021.csv
inst/sql/ebs_gear_temperature_all_hauls.sql
inst/sql/ebs_gear_temperature_all_hauls_current_year.sql
inst/sql/ebs_gear_temperature_cold_pool_hauls.sql
inst/sql/ebs_gear_temperature_cold_pool_hauls_current_year.sql
man/calcindices_temp.Rd
man/cold_pool_index.Rd
man/convert_ddm_to_dd.Rd
man/cpa_from_raster.Rd
man/cpa_pre2021.Rd
man/data2raster.Rd
man/ebs_bottom_salinity.Rd
man/ebs_bottom_temperature.Rd
man/ebs_proj_crs.Rd
man/ebs_surface_temperature.Rd
man/estimate_anisotropy.Rd
man/estimate_z_expansion.Rd
man/get_connected.Rd
man/get_data.Rd
man/interpolate_variable.Rd
man/interpolation_wrapper.Rd
man/kriging_cv.Rd
man/legend_discrete_cbar.Rd
man/loocv_gear_temp.Rd
man/make_raster_file.Rd
man/make_raster_stack.Rd
man/nbs_ebs_bottom_salinity.Rd
man/nbs_ebs_bottom_temperature.Rd
man/nbs_ebs_surface_temperature.Rd
man/nbs_mean_temperature.Rd
man/parseregion.Rd
man/plot_loocv_rmse.Rd
man/scale_fill_fermenter_custom.Rd
man/sql_to_rqry.Rd
man/theme_multi_map.Rd
man/theme_multi_map_blue_strip.Rd
man/theme_tm_no_legend.Rd
man/vgm_fn.Rd
plots/2021/2021_anomaly.png
plots/2021/2021_average_temperature.png
plots/2021/2021_cold_pool_index.png
plots/2021/2021_coldpool.png
plots/2021/2021_coldpool_with_area.png
plots/2021/2021_nbs_ebs_temperature_contour_map.png
plots/2021/2021_nbs_ebs_temperature_map.png
plots/2021/2021_plot_sebs_average_temperature.png
plots/2021/2021_stacked_temperature_simple_label.png
plots/2022/2022_anomaly.png
plots/2022/2022_average_temperature.png
plots/2022/2022_cold_pool_index.Rmd
plots/2022/2022_cold_pool_index.docx
plots/2022/2022_cold_pool_index.png
plots/2022/2022_coldpool.png
plots/2022/2022_coldpool_with_area.png
plots/2022/2022_nbs_ebs_sst_map_grid.png
plots/2022/2022_nbs_ebs_temperature_contour_map.png
plots/2022/2022_nbs_ebs_temperature_map.png
plots/2022/2022_nbs_ebs_temperature_map_grid.png
plots/2022/2022_plot_sebs_average_temperature.png
plots/2022/2022_stacked_temperature.png
plots/2022/2022_stacked_temperature_simple_label.png
plots/2022/2023_cold_pool_index.png
plots/2022/annual_bt/1982_ebs_bt_map.png
plots/2022/annual_bt/1983_ebs_bt_map.png
plots/2022/annual_bt/1984_ebs_bt_map.png
plots/2022/annual_bt/1985_ebs_bt_map.png
plots/2022/annual_bt/1986_ebs_bt_map.png
plots/2022/annual_bt/1987_ebs_bt_map.png
plots/2022/annual_bt/1988_ebs_bt_map.png
plots/2022/annual_bt/1989_ebs_bt_map.png
plots/2022/annual_bt/1990_ebs_bt_map.png
plots/2022/annual_bt/1991_ebs_bt_map.png
plots/2022/annual_bt/1992_ebs_bt_map.png
plots/2022/annual_bt/1993_ebs_bt_map.png
plots/2022/annual_bt/1994_ebs_bt_map.png
plots/2022/annual_bt/1995_ebs_bt_map.png
plots/2022/annual_bt/1996_ebs_bt_map.png
plots/2022/annual_bt/1997_ebs_bt_map.png
plots/2022/annual_bt/1998_ebs_bt_map.png
plots/2022/annual_bt/1999_ebs_bt_map.png
plots/2022/annual_bt/2000_ebs_bt_map.png
plots/2022/annual_bt/2001_ebs_bt_map.png
plots/2022/annual_bt/2002_ebs_bt_map.png
plots/2022/annual_bt/2003_ebs_bt_map.png
plots/2022/annual_bt/2004_ebs_bt_map.png
plots/2022/annual_bt/2005_ebs_bt_map.png
plots/2022/annual_bt/2006_ebs_bt_map.png
plots/2022/annual_bt/2007_ebs_bt_map.png
plots/2022/annual_bt/2008_ebs_bt_map.png
plots/2022/annual_bt/2009_ebs_bt_map.png
plots/2022/annual_bt/2010_ebs_bt_map.png
plots/2022/annual_bt/2011_ebs_bt_map.png
plots/2022/annual_bt/2012_ebs_bt_map.png
plots/2022/annual_bt/2013_ebs_bt_map.png
plots/2022/annual_bt/2014_ebs_bt_map.png
plots/2022/annual_bt/2015_ebs_bt_map.png
plots/2022/annual_bt/2016_ebs_bt_map.png
plots/2022/annual_bt/2017_ebs_bt_map.png
plots/2022/annual_bt/2018_ebs_bt_map.png
plots/2022/annual_bt/2019_ebs_bt_map.png
plots/2022/annual_bt/2021_ebs_bt_map.png
plots/2022/annual_bt/2022_ebs_bt_map.png
plots/2023/2023_anomaly.png
plots/2023/2023_average_temperature.png
plots/2023/2023_cold_pool_index.Rmd
plots/2023/2023_cold_pool_index.png
plots/2023/2023_coldpool.png
plots/2023/2023_coldpool_with_area.png
plots/2023/2023_nbs_ebs_sst_map_grid.png
plots/2023/2023_nbs_ebs_temperature_map.png
plots/2023/2023_nbs_ebs_temperature_map_grid.png
plots/2023/2023_plot_sebs_average_temperature.png
plots/2023/2023_stacked_temperature.png
plots/2023/2023_stacked_temperature_simple_label.png
plots/2024_average_temperature.png
plots/2024_cold_pool_index.png
plots/2024_coldpool.png
plots/2024_coldpool_with_area.png
plots/2024_nbs_ebs_sst_map_grid.png
plots/2024_nbs_ebs_temperature_map_grid.png
plots/2024_plot_sebs_average_temperature.png
plots/2024_stacked_temperature.png
plots/2024_stacked_temperature_simple_label.png
plots/analysis_figs/MEAN_BT_LT100M_strata.png
plots/analysis_figs/RSPE_violin_GEAR_TEMPERATURE_1.png
plots/analysis_figs/RSPE_violin_GEAR_TEMPERATURE_2.png
plots/analysis_figs/RSPE_violin_GEAR_TEMPERATURE_3.png
plots/analysis_figs/RSPE_violin_GEAR_TEMPERATURE_4.png
plots/analysis_figs/RSPE_violin_GEAR_TEMPERATURE_5.png
plots/analysis_figs/RSPE_violin_surface_temperature_1.png
plots/analysis_figs/RSPE_violin_surface_temperature_2.png
plots/analysis_figs/RSPE_violin_surface_temperature_3.png
plots/analysis_figs/RSPE_violin_surface_temperature_4.png
plots/analysis_figs/RSPE_violin_surface_temperature_5.png
plots/analysis_figs/bt_by_year.png
plots/analysis_figs/bt_by_year_methods_abs_diff.png
plots/analysis_figs/bt_by_year_methods_rel_diff.png
plots/analysis_figs/bt_methods_multipanel.png
plots/analysis_figs/cpa_by_year.png
plots/analysis_figs/cpa_by_year_methods_abs_diff.png
plots/analysis_figs/cpa_by_year_methods_rel_diff.png
plots/analysis_figs/cpa_methods_multipanel.png
plots/analysis_figs/doy_for_tm.png
plots/analysis_figs/mean_bottom_temp_lte100m_method_comp.png
plots/analysis_figs/sst_by_year.png
plots/analysis_figs/sst_by_year_methods_abs_diff.png
plots/analysis_figs/sst_by_year_methods_rel_diff.png
plots/analysis_figs/sst_methods_multipanel.png
plots/analysis_figs/tm_average_temperature.png
plots/analysis_figs/tm_coldpool_grid_1.png
plots/analysis_figs/tm_coldpool_grid_2.png
plots/analysis_figs/tm_nbs_ebs_temperature_contour_map.png
plots/analysis_figs/tm_nbs_ebs_temperature_map.png
plots/analysis_figs/tm_plot_sebs_average_temperature.png
plots/analysis_figs/tm_stacked_temperature.png
plots/annual_bt.zip
plots/annual_bt/1982_ebs_bt_map.png
plots/annual_bt/1983_ebs_bt_map.png
plots/annual_bt/1984_ebs_bt_map.png
plots/annual_bt/1985_ebs_bt_map.png
plots/annual_bt/1986_ebs_bt_map.png
plots/annual_bt/1987_ebs_bt_map.png
plots/annual_bt/1988_ebs_bt_map.png
plots/annual_bt/1989_ebs_bt_map.png
plots/annual_bt/1990_ebs_bt_map.png
plots/annual_bt/1991_ebs_bt_map.png
plots/annual_bt/1992_ebs_bt_map.png
plots/annual_bt/1993_ebs_bt_map.png
plots/annual_bt/1994_ebs_bt_map.png
plots/annual_bt/1995_ebs_bt_map.png
plots/annual_bt/1996_ebs_bt_map.png
plots/annual_bt/1997_ebs_bt_map.png
plots/annual_bt/1998_ebs_bt_map.png
plots/annual_bt/1999_ebs_bt_map.png
plots/annual_bt/2000_ebs_bt_map.png
plots/annual_bt/2001_ebs_bt_map.png
plots/annual_bt/2002_ebs_bt_map.png
plots/annual_bt/2003_ebs_bt_map.png
plots/annual_bt/2004_ebs_bt_map.png
plots/annual_bt/2005_ebs_bt_map.png
plots/annual_bt/2006_ebs_bt_map.png
plots/annual_bt/2007_ebs_bt_map.png
plots/annual_bt/2008_ebs_bt_map.png
plots/annual_bt/2009_ebs_bt_map.png
plots/annual_bt/2010_ebs_bt_map.png
plots/annual_bt/2011_ebs_bt_map.png
plots/annual_bt/2012_ebs_bt_map.png
plots/annual_bt/2013_ebs_bt_map.png
plots/annual_bt/2014_ebs_bt_map.png
plots/annual_bt/2015_ebs_bt_map.png
plots/annual_bt/2016_ebs_bt_map.png
plots/annual_bt/2017_ebs_bt_map.png
plots/annual_bt/2018_ebs_bt_map.png
plots/annual_bt/2019_ebs_bt_map.png
plots/annual_bt/2021_ebs_bt_map.png
plots/annual_bt/2022_ebs_bt_map.png
plots/annual_bt/2023_ebs_bt_map.png
plots/annual_bt/2024_ebs_bt_map.png
plots/cpa_table.csv
plots/ebs_nbs_survey_area.png
