data-raw/gmt2rda.R

In afukushima/MSEApdata: Metabolite-set data collection for pathway analysis in metabolomics

library("MSEAp")

mset_Reactome_ATH_format_HMDB <- read.gmt("./R-ATH_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_ATH_format_HMDB)
rm(mset_Reactome_ATH_format_HMDB)

mset_Reactome_ATH_format_KEGG <- read.gmt("./R-ATH_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_ATH_format_KEGG)
rm(mset_Reactome_ATH_format_KEGG)

mset_Reactome_BTA_format_HMDB <- read.gmt("./R-BTA_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_BTA_format_HMDB)
rm(mset_Reactome_BTA_format_HMDB)

mset_Reactome_BTA_format_KEGG <- read.gmt("./R-BTA_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_BTA_format_KEGG)
rm(mset_Reactome_BTA_format_KEGG)

mset_Reactome_CEL_format_HMDB <- read.gmt("./R-CEL_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_CEL_format_HMDB)
rm(mset_Reactome_CEL_format_HMDB)

mset_Reactome_CEL_format_KEGG <- read.gmt("./R-CEL_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_CEL_format_KEGG)
rm(mset_Reactome_CEL_format_KEGG)

mset_Reactome_CFA_format_HMDB <- read.gmt("./R-CFA_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_CFA_format_HMDB)
rm(mset_Reactome_CFA_format_HMDB)

mset_Reactome_CFA_format_KEGG <- read.gmt("./R-CFA_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_CFA_format_KEGG)
rm(mset_Reactome_CFA_format_KEGG)
 
mset_Reactome_DDI_format_HMDB <- read.gmt("./R-DDI_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_DDI_format_HMDB)
rm(mset_Reactome_DDI_format_HMDB)

mset_Reactome_DDI_format_KEGG <- read.gmt("./R-DDI_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_DDI_format_KEGG)
rm(mset_Reactome_DDI_format_KEGG)

mset_Reactome_DME_format_HMDB <- read.gmt("./R-DME_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_DME_format_HMDB)
rm(mset_Reactome_DME_format_HMDB)

mset_Reactome_DME_format_KEGG <- read.gmt("./R-DME_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_DME_format_KEGG)
rm(mset_Reactome_DME_format_KEGG)

mset_Reactome_DRE_format_HMDB <- read.gmt("./R-DRE_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_DRE_format_HMDB)
rm(mset_Reactome_DRE_format_HMDB)

mset_Reactome_DRE_format_KEGG <- read.gmt("./R-DRE_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_DRE_format_KEGG)
rm(mset_Reactome_DRE_format_KEGG)

mset_Reactome_GGA_format_HMDB <- read.gmt("./R-GGA_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_GGA_format_HMDB)
rm(mset_Reactome_GGA_format_HMDB)

mset_Reactome_GGA_format_KEGG <- read.gmt("./R-GGA_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_GGA_format_KEGG)
rm(mset_Reactome_GGA_format_KEGG)

mset_Reactome_HSA_format_HMDB <- read.gmt("./R-HSA_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_HSA_format_HMDB)
rm(mset_Reactome_HSA_format_HMDB)

mset_Reactome_HSA_format_KEGG <- read.gmt("./R-HSA_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_HSA_format_KEGG)
rm(mset_Reactome_HSA_format_KEGG)

mset_Reactome_MMU_format_HMDB <- read.gmt("./R-MMU_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_MMU_format_HMDB)
rm(mset_Reactome_MMU_format_HMDB)

mset_Reactome_MMU_format_KEGG <- read.gmt("./R-MMU_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_MMU_format_KEGG)
rm(mset_Reactome_MMU_format_KEGG)

mset_Reactome_MTU_format_HMDB <- read.gmt("./R-MTU_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_MTU_format_HMDB)
rm(mset_Reactome_MTU_format_HMDB)

mset_Reactome_MTU_format_KEGG <- read.gmt("./R-MTU_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_MTU_format_KEGG)
rm(mset_Reactome_MTU_format_KEGG)

mset_Reactome_OSA_format_HMDB <- read.gmt("./R-OSA_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_OSA_format_HMDB)
rm(mset_Reactome_OSA_format_HMDB)

mset_Reactome_OSA_format_KEGG <- read.gmt("./R-OSA_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_OSA_format_KEGG)
rm(mset_Reactome_OSA_format_KEGG)

mset_Reactome_PFA_format_HMDB <- read.gmt("./R-PFA_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_PFA_format_HMDB)
rm(mset_Reactome_PFA_format_HMDB)

mset_Reactome_PFA_format_KEGG <- read.gmt("./R-PFA_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_PFA_format_KEGG)
rm(mset_Reactome_PFA_format_KEGG)

mset_Reactome_RNO_format_HMDB <- read.gmt("./R-RNO_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_RNO_format_HMDB)
rm(mset_Reactome_RNO_format_HMDB)

mset_Reactome_RNO_format_KEGG <- read.gmt("./R-RNO_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_RNO_format_KEGG)
rm(mset_Reactome_RNO_format_KEGG)

mset_Reactome_SCE_format_HMDB <- read.gmt("./R-SCE_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_SCE_format_HMDB)
rm(mset_Reactome_SCE_format_HMDB)

mset_Reactome_SCE_format_KEGG <- read.gmt("./R-SCE_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_SCE_format_KEGG)
rm(mset_Reactome_SCE_format_KEGG)

mset_Reactome_SPO_format_HMDB <- read.gmt("./R-SPO_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_SPO_format_HMDB)
rm(mset_Reactome_SPO_format_HMDB)

mset_Reactome_SPO_format_KEGG <- read.gmt("./R-SPO_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_SPO_format_KEGG)
rm(mset_Reactome_SPO_format_KEGG)

mset_Reactome_SSC_format_HMDB <- read.gmt("./R-SSC_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_SSC_format_HMDB)
rm(mset_Reactome_SSC_format_HMDB)

mset_Reactome_SSC_format_KEGG <- read.gmt("./R-SSC_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_SSC_format_KEGG)
rm(mset_Reactome_SSC_format_KEGG)

mset_Reactome_TGU_format_HMDB <- read.gmt("./R-TGU_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_TGU_format_HMDB)
rm(mset_Reactome_TGU_format_HMDB)

mset_Reactome_TGU_format_KEGG <- read.gmt("./R-TGU_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_TGU_format_KEGG)
rm(mset_Reactome_TGU_format_KEGG)

mset_Reactome_XTR_format_HMDB <- read.gmt("./R-XTR_format_HMDB.gmt", format="HMDB")
devtools::use_data(mset_Reactome_XTR_format_HMDB)
rm(mset_Reactome_XTR_format_HMDB)

mset_Reactome_XTR_format_KEGG <- read.gmt("./R-XTR_format_KEGG.gmt", format="KEGG")
devtools::use_data(mset_Reactome_XTR_format_KEGG)
rm(mset_Reactome_XTR_format_KEGG)