Man pages for agaye/ESPRESSO.LD
Power Analysis and Sample Size Calculation for two SNPs in Linkage Disequilibrium
| geno1.params | Parameters to generate genetic exposures data |
| geno2.params | Parameters to generate genetic exposures data |
| get.critical.results.LD | Summarizes the main results |
| get.observed.data.LD | Generates exposure data with some error |
| get.obs.geno | Adds some error to genotype data |
| get.obs.pheno | Generates observed outcome data |
| glm.analysis.LD | Carries out regression analysis |
| is.posdef | Checks if a matrix is positive definite |
| make.cov.mat | Generates the covariance matrix required to achieved the... |
| make.posdef | Turns a matrix into a positive definite one |
| pheno.params | Parameters for the outcome variable |
| power.calc.LD | Calculates the empirical and theoretical power |
| run.espresso.LD | Runs a full ESPRESSO analysis |
| samplsize.calc.LD | Calculates the sample size required to achieve the desired... |
| sim.CC.data.LD | Simulates case and controls |
| sim.geno.data | Generates genotypes for a genetic variant |
| sim.LDgeno.data | Generates genotypes for two genetic variants in LD |
| sim.LDsnps | Generates alleles for two biallelic SNPs in Linkage... |
| sim.pheno.bin.LD | Generates phenotype status |
| sim.pheno.qtl.LD | Simulates continuous outcome data |
| sim.QTL.data.LD | Simulates subjects for continuous outcome |
| sim.subject.data | Simulates the individual effect related to heterogeneity in... |
| simulation.params | Main parameters of the simulations |
