get.observed.data.LD: Generates exposure data with some error

In agaye/ESPRESSO.LD: Power Analysis and Sample Size Calculation for two SNPs in Linkage Disequilibrium

Description

Uses THE function make.obs.geno to generate effect data with a set level of error

Usage

get.observed.data.LD(data = NULL, g1.error = NULL, g1.model = NULL,
  freq1 = NULL, g2.error = NULL, g2.model = NULL, freq2 = NULL)

Arguments

data	Input table of simulated data considered as true data
g1.error	Misclassification rates in the assessment of the first genetic variant: 1-sensitivity and 1-specificity
g1.model	Genetic model of the first genetic variant; 0 for binary and 1 for additive
freq1	Minor allele frequency of the first genetic variant
g2.error	Misclassification rates in the assessment of the second genetic variant: 1-sensitivity and 1-specificity
g2.model	Genetic model of the second genetic variant; 0 for binary and 1 for additive
freq2	Minor allele frequency of the second genetic variant

Value

A matrix

Author(s)

Gaye A

agaye/ESPRESSO.LD documentation built on May 10, 2019, 7:31 a.m.