make.cov.mat: Generates the covariance matrix required to achieved the...
In agaye/ESPRESSO.LD: Power Analysis and Sample Size Calculation for two SNPs in Linkage Disequilibrium
Description
Usage
Arguments
Value
Author(s)
References
Description
Finds the covariance values required to achieve the
specified frequency of major allele haplotype
Usage
1
make.cov.mat(cor.mat, freqs)
Arguments
cor.mat
Correlation matrix
freqs
Major allele frequencies of the two snps
is.add
Models of the two variants
Value
A 2X2 covariance matrix
Author(s)
Gaye A.
References
Montana, G. 2005, HapSim: a simulation tool for
generating haplotype data with pre-specified allele
frequencies and LD coefficients., Bioinformatics,
vol. 21 (23), pp.4309-4311.
agaye/ESPRESSO.LD documentation built on May 10, 2019, 7:31 a.m.
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Description Usage Arguments Value Author(s) References
Description
Finds the covariance values required to achieve the specified frequency of major allele haplotype
Usage
1 | make.cov.mat(cor.mat, freqs)
|
Arguments
cor.mat |
Correlation matrix |
freqs |
Major allele frequencies of the two snps |
is.add |
Models of the two variants |
Value
A 2X2 covariance matrix
Author(s)
Gaye A.
References
Montana, G. 2005, HapSim: a simulation tool for
generating haplotype data with pre-specified allele
frequencies and LD coefficients., Bioinformatics,
vol. 21 (23), pp.4309-4311.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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