checkReplicates: checkReplicates Function

In aifimmunology/PALMO: Identify Intra and Inter-Donor Variations in Bulk or Single Cell Longitudinal Dataset

checkReplicates Function

Description

This function allows you to check for any replicates in data. If present then merge expression of samples by median provided mergeReplicates=TRUE

Usage

checkReplicates(data_object, mergeReplicates = FALSE)

Arguments

data_object	Input PALMO S4 object. Contains annotation table and expression matrix or data frame. Rows represent gene/proteins column represents participant samples (same as annotation table Sample column)
mergeReplicates	Merge replicates expression data by Median. Default FALSE

Value

PALMO object with merged replicates

Examples

## Not run: 
palmo_obj=checkReplicates(data_object=palmo_obj, mergeReplicates=TRUE)

## End(Not run)

aifimmunology/PALMO documentation built on Oct. 21, 2022, 7:39 p.m.