outlierDetectP: outlierDetectP Function

In aifimmunology/PALMO: Identify Intra and Inter-Donor Variations in Bulk or Single Cell Longitudinal Dataset

outlierDetectP Function

Description

This function allows to identify significant abnormal event identified from outlier analysis.

Usage

outlierDetectP(
  outlier_events,
  z_cutoff = 2,
  nGenes,
  group_by = "PTID",
  alternative = "two.sided"
)

Arguments

outlier_events	Identified outlier events
z_cutoff	|Z| cutoff threshold to find potential outliers (Eg. z_cutoff= 2, equals to Mean/SD 2)
nGenes	Number of background genes/features
group_by	Column name to use for groupwise outlier analysis. Default is PTID (donor or participant id).
alternative	alternative hypothesis, must be one of "one.sided" or "two.sided" (default)

Value

PALMO object with outlier event p value dataframe

PALMO object with outlier event p value

Examples

## Not run: 
outlierDetectP(outlier_events=outlier_res, z_cutoff=2, nGenes=1043)

## End(Not run)

aifimmunology/PALMO documentation built on Oct. 21, 2022, 7:39 p.m.