naFilter: naFilter Function

In aifimmunology/PALMO: Identify Intra and Inter-Donor Variations in Bulk or Single Cell Longitudinal Dataset

naFilter Function

Description

This function allows users to filter genes/features having expression NAs with user-defined threshold.

Usage

naFilter(data_object, na_cutoff = 0.4)

Arguments

data_object	Input PALMO S4 object. It contains annotation information and expression data from Bulk or single cell data.
na_cutoff	Threshold to remove NAs. Range is 0-1 (Default 0.4 means40% NAs are not allowed).

Value

PALMO object with filtered NAs

Examples

## Not run: 
palmo_obj <- naFilter(data_object=palmo_obj, na_cutoff=0.4)

## End(Not run)

aifimmunology/PALMO documentation built on Oct. 21, 2022, 7:39 p.m.