multimodalView: multimodalView Function

In aifimmunology/PALMO: Identify Intra and Inter-Donor Variations in Bulk or Single Cell Longitudinal Dataset

multimodalView Function

Description

This function allows to visualize the multimodal view genes of interest by celltypes/ groups defined by use

Usage

multimodalView(
  modality1,
  modality2,
  group_oi = NULL,
  geneList,
  colorThreshold = 10,
  group_position = NULL,
  plotHeight = 10,
  titleName = "",
  colorMax = NULL,
  colorscale = FALSE,
  fileName = NULL,
  filePATH = NULL
)

Arguments

modality1	Variation or Expression matrix/data frame. Rows represents gene/proteins column represents group:donor (group and donor separated by :)
modality2	Variation or Expression matrix/data frame. Rows represents gene/proteins column represents group:donor (group and donor separated by :)
group_oi	Optional, User-defined groups to consider and order
geneList	Genes of interest to explore
colorThreshold	User-defined color threshold in color space
group_position	Default 1, use 2 when columns are donor:group format
plotHeight	User-defined Plot size (in)
titleName	Title of the plot
colorMax	Maximum CV value in heatplot ("max", numeric or NULL)
colorscale	Show color scale, TRUE or FALSE (default).
fileName	User defined filename
filePATH	User-defined output directory PATH to save result

Value

Multimodal plot and data list

Examples

## Not run: 
multimodalView(modality1=scrna_cv_res, modality2=scatac_cv_res, geneList)

## End(Not run)

aifimmunology/PALMO documentation built on Oct. 21, 2022, 7:39 p.m.