AdjustBatch: AdjustBatch
In aiminy/3UTR-Seq: An R package for processing and analyzing 3UTR,DOGs and 5UTR data
Description
Usage
Arguments
Examples
Description
AdjustBatch
Usage
1
2
AdjustBatch(re.rMAT.com.total.test.2, DE.norm.with.rpkm.norm.2, dir.name,
out_by_p, out_by_gene, out_gene_interested, out_gene_interested_sig)
Arguments
re.rMAT.com.total.test.2
Examples
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10
dir.name="/media/H_driver/2016/Ramin_azhang/for_bioinfo_core/RNA_seq/Results4NewData/"
re.3UTR<-AdjustBatch(re.rMAT.com.total.test.2,dir.name,"By_P","By_Gene","Interested_gene_only","Interested_gene_only_sig")
re.3UTR.one.side<-AdjustBatch(re.rMAT.com.total.test.2,dir.name,"By_P_one_side","By_Gene_one_side",
"Interested_gene_only_one_side","Interested_gene_only_sig_one_side")
re.3UTR.one.side.norm<-AdjustBatch(re.rMAT.com.total.test.2,DE.norm.with.rpkm.norm.2,dir.name,"By_P_one_side_norm_2","By_Gene_one_side_norm_2",
"Interested_gene_only_one_side_norm_2","Interested_gene_only_sig_one_side_norm_2")
aiminy/3UTR-Seq documentation built on May 10, 2019, 7:36 a.m.
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Description Usage Arguments Examples
Description
AdjustBatch
Usage
1 2 | AdjustBatch(re.rMAT.com.total.test.2, DE.norm.with.rpkm.norm.2, dir.name,
out_by_p, out_by_gene, out_gene_interested, out_gene_interested_sig)
|
Arguments
re.rMAT.com.total.test.2 |
Examples
1 2 3 4 5 6 7 8 9 10 | dir.name="/media/H_driver/2016/Ramin_azhang/for_bioinfo_core/RNA_seq/Results4NewData/"
re.3UTR<-AdjustBatch(re.rMAT.com.total.test.2,dir.name,"By_P","By_Gene","Interested_gene_only","Interested_gene_only_sig")
re.3UTR.one.side<-AdjustBatch(re.rMAT.com.total.test.2,dir.name,"By_P_one_side","By_Gene_one_side",
"Interested_gene_only_one_side","Interested_gene_only_sig_one_side")
re.3UTR.one.side.norm<-AdjustBatch(re.rMAT.com.total.test.2,DE.norm.with.rpkm.norm.2,dir.name,"By_P_one_side_norm_2","By_Gene_one_side_norm_2",
"Interested_gene_only_one_side_norm_2","Interested_gene_only_sig_one_side_norm_2")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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