ProcessOutputFilesFrom3UTR_recount: ProcessOutputFilesFrom3UTR_recount

In aiminy/3UTR-Seq: An R package for processing and analyzing 3UTR,DOGs and 5UTR data

Description

read the mapping results from the Dogs of each gene

Usage

ProcessOutputFilesFrom3UTR_recount(dir.name, input.file.pattern,
  input.file.pattern.4.interested.gene, out_by_p, out_by_gene,
  out_gene_interested, out_gene_interested_sig)

Arguments

dir.name:	the path for input files
input.file.pattern:	input file pattern

Examples

#new data
dir.name="/media/H_driver/2016/Ramin_azhang/"

input.file.pattern="*downstream.count.plus.minus.and.minus.plus.3.FPKM.xls"

input.file.pattern.4.interested.gene="final_list.csv"

out_put="for_bioinfo_core/RNA_seq/Results4Check/"

out_by_p=paste0(out_put,"DE_by_p.csv")
out_by_gene=paste0(out_put,"DE_by_gene.csv")
out_gene_interested=paste0(out_put,"DE_by_interested_gene.csv")
out_gene_interested_sig=paste0(out_put,"DE_by_interested_gene_sig.csv")

re<-ProcessOutputFilesFrom3UTR_recount(dir.name,input.file.pattern,input.file.pattern.4.interested.gene,out_by_p,out_by_gene,out_gene_interested,out_gene_interested_sig)

aiminy/3UTR-Seq documentation built on May 10, 2019, 7:36 a.m.