R/clusterProfiler-package.R

In aiminy/ModifiedclusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters

#' statistical analysis and visualization of functional profiles for genes and
#' gene clusters
#' The package implements methods to analyze and visualize functional profiles
#' of gene and gene clusters.
#'
#' This package is designed to compare gene clusters functional profiles.
#'
#' \tabular{ll}{ Package: \tab clusterProfiler\cr Type: \tab Package\cr
#' Version: \tab 1.9.\cr Date: \tab 06-13-2013\cr biocViews:\tab GO,
#' Clustering, Visulization\cr Depends:\tab AnnotationDbi, GO.db, org.Hs.eg.db,
#' ggplot2, plyr, methods\cr Suggests:\tab GOSemSim\cr License: \tab
#' Artistic-2.0\cr }
#'
#' @name clusterProfiler-package
#' @aliases clusterProfiler-package clusterProfiler
#' @docType package
#' @author Guangchuang Yu \email{guangchuangyu@@gmail.com}
#'
#' Maintainer: Guangchuang Yu \email{guangchuangyu@@gmail.com}
#' @seealso \linkS4class{compareClusterResult}, \linkS4class{groupGOResult}
#'   \linkS4class{enrichResult}
#' @keywords package
NULL



#' Datasets
#' gcSample contains a sample of gene clusters.
#'
#'
#' @name DataSet
#' @aliases gcSample
#' @docType data
#' @keywords datasets
NULL

#' Datasets
#' kegg_species contains kegg species information
#'
#'
#' @name DataSet
#' @aliases kegg_species
#' @docType data
#' @keywords datasets
NULL