check.loadings | Quick check to make sure I understand PC loadings |
check.plausibility | Check plausibility of model |
check.sdm.quality | Check SDM quality |
check.thresholds | Check Thresholds |
check.var.names | Check variable names for spatialdemography compliance |
classify.plots | Classify Plots |
compute.frag | Create fragmentation data set for use |
convert.sp.data | Convert my.data to a format more easily used by the code |
convert.sp.data.old | Convert my.data to a format more easily used by the code |
do.basic.sdm | Basic SDM approach |
do.descriptives | Do descriptives |
do.sdm | A main function to run the Species Distribution Model |
do.sdm.prefit | SDM Evaluate the fit of an externally defined relationship |
do.spatial.demography | Main function for generating the spatial demography outputs |
drop.rare.sp | Drop rare species |
evaluate.spatialdemography | Evaluate results of spatialdemography model runs |
evaluate.spatialdemography.v2 | Evaluate results of spatialdemography model runs using list... |
extract.actual | Extract actual results |
extract.cell.values | Extract the value of a single cell from the SpeciesData.csv |
extrapolation.test | Extrapolation test |
fix.plotid | Fix plot ID |
frag.analysis | Function to process fragmentation data |
frag.pca | Reduce number of variables for highly-correlated multiscale... |
frag.pca.old | Examine fragmentation data and consider variable reduction |
get.index | Get Index |
get.occ.plots | Get number of plots occupied by each species |
get.scale.lst | Set up scale.cells.lst for the biodiveristy exploratories |
get.sr | Get species richness |
get.survival | Read in survival data |
get.thresholds | Get thresholds |
get.thresholds.old | Get thresholds |
hb.split | Split aggregated trait file into separate files |
make.frag | Read in fragmentation data |
merge.data | Merge data |
metacom.analysis | Use metacom package to assess the biotic filter for... |
my.junk | Junk - alternative approach that I may come back to |
output.results.to.table | Output Results to Table |
plant.data.comparison | Compare plant data between exploratories and Eva's data |
predictor.descriptive.analysis | Predictor descriptive analysis |
prepare.spfile | Prepare species file |
prepare.sp.locations | Create species locations file |
prepare.sp.locations.old | Create species locations file |
prep.data | prepare data for validation |
prossesing.notes | Notes on insectscales processing |
read.8plot.data | Read in Data from Eva, Helge, & Ute |
read.climate | Read in (yearly) climate data |
read.ludata | Read in land use data |
read.sp.data | Read in be_data file |
read.traits | Read traits |
reformat.sb.plant.data | Reformat steffen's plant data |
Reimagine | Function to fix problems with Imagine function in metacom... |
sdm.visualize.main | SDM Visualize Main |
set.up.biotic.predictors | main function for biotic predictors |
setup.env.lyrs | Helper function to set data up for biomod |
setup.locs | Set up species locations |
setup.predictors | Main function for reading in x variables |
spdem.extract | Extract data for a species distribution model from... |
spdem.prep | prepare data set for spatialdemography model |
species.descriptive.analysis | descriptive analysis for species |
subset.by.traits | Subset by traits |
summarize.validation | Create a summary from multiple simulations |
test.biomod2 | Test biomod |
try.biomod | Test biomod2 with Biodiversity Exploratories data |
unfinished.function | I switched to processing in ArcGIS, but there are already... |
validate.sdm | Validate SDM |
visualize.sdm | Create a visual of the SDM predictions |
why.not.include.biotic.interactions | Biotic interactions note |
year.subset | Year subset |
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