Results.Outputs: Results Outputs

In akeyel/spatialdemography: A Spatially Explicit Metacommunity Model

Description

File outputs generated by the model (including some optional outputs by requesting visual debugger data or matrix diagnostics.

Details

Table summarizes how many files are produced per model run (MR), scenario (SC), timestep (TS), cell (CL), species (SP), environmental layer (EL), environmental conditions (EC).
The file production is multiplicative (e.g., 100 timesteps x 2 species = 200 files)

File type	Number of Files created	Link to File description
Seeds in landscape	MR, SC, TS, SP	stage.abundances
Juveniles in landscape	MR, SC, TS, SP	stage.abundances
Adults in landscape	MR, SC, TS, SP	stage.abundances
Local transition matrices	MR, SC, CL, SP, EC	local.transition.matrices
Landscape-wide matrices	MR, SC, SP, EC	landscape.wide.matrix
Local matrix summary info	MR, SC, SP, EC	local.matrix.summary.info
Overall matrix diagnostics	MR, SC, EC	overall.matrix.diagnostics
Landscape files	MR*, SC*, EL, EC; *can be reused	landscape.files
Change lookup	MR, SC	change.lookup
Cell occupancy	MR, SC	cell.occupancy
Species statistics seeds	MR, SC	species.statistics
Species statistics juveniles	MR, SC	species.statistics
Species statistics adults	MR, SC	species.statistics
Scenario Timing	MR, SC	scenario.timing
Model Results	MR	results.file

akeyel/spatialdemography documentation built on May 12, 2019, 4:43 a.m.