setup.locations: Set up species locations in the landscape

In akeyel/spatialdemography: A Spatially Explicit Metacommunity Model

Description

Function to implement one of several options for species assignment

Usage

setup.locations(n0.lst, spe, S, p, ic, settings, locations.file, SpTraits,
  rtd.c, run.path)

Arguments

n0.lst	An initial abundance vector containing abundances of every species at every stage for every cell
spe	The total number of species in the landscape
S	The number of stages in the matrix model
p	The number of cells in a square landscape
ic	The initial conditions read in from the initial conditions file
settings	The initial settings, read in from the initial settings file
locations.file	A file giving the species locations. If no such file exists, this parameter should be set to "none".
SpTraits	The Species traits, read in from the species file
rtd.c	An indicator identifiying response traits. Currently broken
run.path	The path for the analysis.

akeyel/spatialdemography documentation built on May 12, 2019, 4:43 a.m.