add_essential_genes: add_essential_genes
In alex-kalinka-cruk/crispRutils: Tools for working with CRISPR data.
Description
Usage
Arguments
Value
Author(s)
View source: R/add_essential_genes.R
Description
Retrieves lists of essential genes for all comparisons in objects of class 'mageck_gene' and 'bagel_gene'.
Usage
1
add_essential_genes(x, mageck_fdr = 0.1, bagel_thresh = NULL)
Arguments
x
An object of class 'mageck_gene' or 'bagel_gene'.
mageck_fdr
A value between 0 and 1 giving the Mageck FDR cutoff for essentiality. Defaults to 0.1, for 10 percent FDR.
bagel_thresh
A numeric value giving the Bagel Bayes Factor threshold. if ‘NULL' (default), it’s taken from the 'bagel_gene' object.
Value
An object of class 'mageck_gene' or 'bagel_gene' depending on the class of input argument 'x'.
Author(s)
Alex T. Kalinka alex.kalinka@cancer.org.uk
alex-kalinka-cruk/crispRutils documentation built on March 13, 2021, 7:52 p.m.
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Description Usage Arguments Value Author(s)
View source: R/add_essential_genes.R
Description
Retrieves lists of essential genes for all comparisons in objects of class 'mageck_gene' and 'bagel_gene'.
Usage
1 | add_essential_genes(x, mageck_fdr = 0.1, bagel_thresh = NULL)
|
Arguments
x |
An object of class 'mageck_gene' or 'bagel_gene'. |
mageck_fdr |
A value between 0 and 1 giving the Mageck FDR cutoff for essentiality. Defaults to 0.1, for 10 percent FDR. |
bagel_thresh |
A numeric value giving the Bagel Bayes Factor threshold. if ‘NULL' (default), it’s taken from the 'bagel_gene' object. |
Value
An object of class 'mageck_gene' or 'bagel_gene' depending on the class of input argument 'x'.
Author(s)
Alex T. Kalinka alex.kalinka@cancer.org.uk
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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