make_pipeline_cleanr_library_file: make_pipeline_cleanr_library_file
In alex-kalinka-cruk/crispRutils: Tools for working with CRISPR data.

Description Usage Arguments Value Author(s)

View source: R/make_pipeline_cleanr_library_file.R

Prepares a 'cleanr' library file (to be compatible with the AZ-CRUK CRISPR pipeline) from either an sgRNA sequence file in which genomic co-ordinates are encoded in sgRNA IDs, or a csv file format used for TechDev benchmarking libraries.

make_pipeline_cleanr_library_file(
  file,
  grna_id_column,
  seq_column,
  gene_column,
  csv = FALSE
)

`file`	A character string naming a path to an sgRNA sequence file.
`grna_id_column`	A character string naming the sgRNA column.
`seq_column`	A character string naming the sequence column.
`gene_column`	A character string naming the sequence column.
`csv`	Logical indicating whether input is a 'csv' file or not. Defaults to 'FALSE'.