neuprint_find_neurons: Find bodies within a given ROI

In alexanderbates/neuprintr: R client utilities for interacting with the neuPrint connectome analysis service

Description

Find bodies that input/output within certain ROIs (i.e. they must have synapses in these areas)

Usage

neuprint_find_neurons(input_ROIs, output_ROIs = NULL, statuses = NULL,
  dataset = NULL, conn = NULL, all_segments = TRUE, ...)

neuprint_bodies_in_ROI(roi, dataset = NULL, all_segments = TRUE,
  conn = NULL, ...)

Arguments

input_ROIs	a vector of input ROIs. Use neuprint_ROIs to see what is available.
output_ROIs	a vector of input ROIs. Use neuprint_ROIs to see what is available.
statuses	if not NULL, only bodies with the given status are considered. Statuses include: Unimportant,0.5assign,Leaves,Prelim Roughly Traced, Anchor, Orphan.
dataset	optional, a dataset you want to query. If NULL, the default specified by your R environ file is used. See neuprint_login for details.
conn	optional, a neuprintr connection object, which also specifies the neuPrint server see ?neuprint_login. If NULL, your defaults set in your R.profile or R.environ are used.
all_segments	if TRUE, all bodies are considered, if FALSE, only 'Neurons', i.e. bodies with a status roughly traced status.
...	methods passed to neuprint_login
roi	a single ROI. Use neuprint_ROIs to see what is available.

Value

a n x n matrix, where the rows are input neurons and the columns are their targets

See Also

neuprint_fetch_custom, neuprint_simple_connectivity, neuprint_common_connectivity

alexanderbates/neuprintr documentation built on May 28, 2019, 6:11 p.m.