neuprint_common_connectivity: Get the common synaptic partners for a set of neurons

In alexanderbates/neuprintr: R client utilities for interacting with the neuPrint connectome analysis service

Description

Get the neurons that are shared synaptic partners for a set of given bodyids, either upstream or downstream.

Usage

neuprint_common_connectivity(bodyids, statuses = NULL,
  prepost = c("PRE", "POST"), all_segments = TRUE, dataset = NULL,
  conn = NULL, ...)

Arguments

bodyids	the cypher by which to make your search
statuses	if not NULL, only bodies with the given status are considered. Statuses include: Unimportant,0.5assign,Leaves,Prelim Roughly Traced, Anchor, Orphan.
prepost	whether to look for partners presynaptic to postsynaptic to the given bodyids
all_segments	if TRUE, all bodies are considered, if FALSE, only 'Neurons', i.e. bodies with a status roughly traced status.
dataset	optional, a dataset you want to query. If NULL, the default specified by your R environ file is used. See neuprint_login for details.
conn	optional, a neuprintr connection object, which also specifies the neuPrint server see ?neuprint_login. If NULL, your defaults set in your R.profile or R.environ are used.
...	methods passed to neuprint_login

Value

a n x m matrix where n correspond to the neurons that all connect to m bodyids

See Also

neuprint_simple_connectivity, neuprint_get_adjacency_matrix

alexanderbates/neuprintr documentation built on May 28, 2019, 6:11 p.m.