neuprint_get_adjacency_matrix: Get an matrix of connectivities between neurons

In alexanderbates/neuprintr: R client utilities for interacting with the neuPrint connectome analysis service

Description

Get an adjacency matrix for the synaptic connectivity within a set of specified bodies

Usage

neuprint_get_adjacency_matrix(bodyids, dataset = NULL,
  all_segments = TRUE, conn = NULL, ...)

Arguments

bodyids	the body IDs for neurons/segments (bodies) you wish to query
dataset	optional, a dataset you want to query. If NULL, the default specified by your R environ file is used. See neuprint_login for details.
all_segments	if TRUE, all bodies are considered, if FALSE, only 'Neurons', i.e. bodies with a status roughly traced status.
conn	optional, a neuprintr connection object, which also specifies the neuPrint server see ?neuprint_login. If NULL, your defaults set in your R.profile or R.environ are used.
...	methods passed to neuprint_login

Value

a n x n matrix, where the rows are input neurons and the columns are their targets

See Also

neuprint_fetch_custom, neuprint_simple_connectivity, neuprint_common_connectivity

alexanderbates/neuprintr documentation built on May 28, 2019, 6:11 p.m.