gid_to_acc: Convert NCBI gene ids to accession numbers

In alexpiper/taxreturn: An R package for retrieving and curating public DNA barcode reference data

Convert NCBI gene ids to accession numbers

Description

Convert NCBI gene ids to accession numbers

Usage

gid_to_acc(
  ids,
  database = "nuccore",
  chunk_size = 300,
  multithread = TRUE,
  progress = FALSE,
  quiet = FALSE
)

Arguments

ids	A character or numeric vector of NCBI gids
database	The origin database of the gids, default 'nuccore'
chunk_size	The size of the chunked searches to conduct. Warning, chunk sizes over 300 can be too big for the NCBI servers.
multithread	Whether multithreading should be used
progress	Whether a progress bar is displayed.
quiet	Whether progress should be printed to the console.

alexpiper/taxreturn documentation built on Sept. 14, 2024, 7:56 p.m.