make_blast_db: Make blast Database
In alexpiper/taxreturn: An R package for retrieving and curating public DNA barcode reference data
make_blast_db R Documentation
Make blast Database
Description
Make blast Database
Usage
make_blast_db(
file,
dbtype = "nucl",
args = NULL,
quiet = FALSE,
remove_gaps = TRUE
)
Arguments
file
(Required) A fasta file to create a database from.
dbtype
(Optional) Molecule type of database, accepts "nucl" for nucleotide or "prot" for protein.
args
(Optional) Extra arguments passed to BLAST
quiet
(Optional) Whether progress should be printed to console, default is FALSE
remove_gaps
(Optional) Whether gaps should be removed from the fasta file. Note that makeblastdb can fail if there are too many gaps in the sequence.
alexpiper/taxreturn documentation built on Sept. 14, 2024, 7:56 p.m.
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| make_blast_db | R Documentation |
Make blast Database
Description
Make blast Database
Usage
make_blast_db(
file,
dbtype = "nucl",
args = NULL,
quiet = FALSE,
remove_gaps = TRUE
)
Arguments
file |
(Required) A fasta file to create a database from. |
dbtype |
(Optional) Molecule type of database, accepts "nucl" for nucleotide or "prot" for protein. |
args |
(Optional) Extra arguments passed to BLAST |
quiet |
(Optional) Whether progress should be printed to console, default is FALSE |
remove_gaps |
(Optional) Whether gaps should be removed from the fasta file. Note that makeblastdb can fail if there are too many gaps in the sequence. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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