query_cor: Run Correlation Query

In alexvpickering/ccbench: Benchmark Connectivity Mapping Approaches

Description

Run Correlation Query

Usage

query_cor(query_genes, drug_info, ngenes = 100, method = "pearson")

Arguments

query_genes	Numeric vector of effect size values with genes as names.
drug_info	Matrix of effect size values to query against. Rows names are genes, column names are signature names.
ngenes	Number of top upregulated and number of top downregulated query_genes that are in common with genes in drug_info.
method	a character string indicating which correlation coefficient (or covariance) is to be computed. One of "pearson" (default), "kendall", or "spearman": can be abbreviated.

Value

Vector of query values with names of corresponding signature in drug_info sorted by decreasing similarity.

alexvpickering/ccbench documentation built on April 11, 2020, 12:28 a.m.