query_fixed_ngenes: Query using fixed number of genes

In alexvpickering/ccbench: Benchmark Connectivity Mapping Approaches

Description

Query using fixed number of genes

Usage

query_fixed_ngenes(dprimes, drug_info, breaks = c(seq(50, 950, 50), 1001))

Arguments

dprimes	List with names of signatures to query with. Each item of list is named a numeric vector of effect size values with names corresponding to the gene.
drug_info	Matrix of differential expression values to query against. Row names are genes and column names are signatures.
breaks	Breaks to use for determing ngenes argument to query_drugs.

Value

Named list with items:

resl	For each value of breaks, a list of pearson correlations between each signature in dprimes and drug_info.
ngenes	For each value of breaks, a numeric vector indicating the number of genes used for the query.

@seealso query_drugs

alexvpickering/ccbench documentation built on April 11, 2020, 12:28 a.m.