query_xcos: Run XCOS Query
In alexvpickering/ccbench: Benchmark Connectivity Mapping Approaches
Description
Usage
Arguments
Value
Description
Run XCOS Query
Usage
1
query_xcos(query_genes, drug_info, ngenes = 100)
Arguments
query_genes
Numeric vector of effect size values with genes as names.
drug_info
Matrix of effect size values to query against. Rows names are genes, column names are signature names.
ngenes
Number of top upregulated and number of top downregulated query_genes that are in
common with genes in drug_info.
Value
Vector of query values with names of corresponding signature in drug_info sorted by decreasing similarity.
alexvpickering/ccbench documentation built on April 11, 2020, 12:28 a.m.
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Description Usage Arguments Value
Description
Run XCOS Query
Usage
1 | query_xcos(query_genes, drug_info, ngenes = 100)
|
Arguments
query_genes |
Numeric vector of effect size values with genes as names. |
drug_info |
Matrix of effect size values to query against. Rows names are genes, column names are signature names. |
ngenes |
Number of top upregulated and number of top downregulated |
Value
Vector of query values with names of corresponding signature in drug_info sorted by decreasing similarity.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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