Files in alexyermanos/Echidna
Single Cell Immune Repertoire and Transcriptome Simulation
.DS_Store
DESCRIPTION
Echidna_0.1.tar.gz
R/.DS_Store
R/Internal_functions.R
R/data.R
R/other_functions.R
R/simulate_repertoire.R
R/vae_generate.R
R/vae_internal_functions.R
README.md
Rscripts_For_Simulation/Sim1.R
Rscripts_For_Simulation/Sim10.R
Rscripts_For_Simulation/Sim11.R
Rscripts_For_Simulation/Sim12.R
Rscripts_For_Simulation/Sim13.R
Rscripts_For_Simulation/Sim2.R
Rscripts_For_Simulation/Sim3.R
Rscripts_For_Simulation/Sim4.R
Rscripts_For_Simulation/Sim5.R
Rscripts_For_Simulation/Sim6.R
Rscripts_For_Simulation/Sim7.R
Rscripts_For_Simulation/Sim8.R
Rscripts_For_Simulation/Sim9.R
Rscripts_For_Simulation/Table_S1_Parameters.xls
data/.DS_Store
data/Bcell_sequences_example_tree.rda
data/Bcell_tree_2.rda
data/class_switch_prob_hum.rda
data/class_switch_prob_mus.rda
data/colors.rda
data/hotspot_df.rda
data/hum_b_h.rda
data/hum_b_l.rda
data/hum_t_h.rda
data/hum_t_l.rda
data/iso_SHM_prob.rda
data/mus_b_h.rda
data/mus_b_l.rda
data/mus_b_trans.rda
data/mus_t_h.rda
data/mus_t_l.rda
data/mus_t_trans.rda
data/one_spot_df.rda
data/pheno_SHM_prob.rda
data/special_v.rda
data/trans_switch_prob_b.rda
data/trans_switch_prob_t.rda
data/vdj_length_prob.rda
man/clonofreq.Rd
man/clonofreq.isotype.data.Rd
man/clonofreq.isotype.plot.Rd
man/clonofreq.trans.data.Rd
man/clonofreq.trans.plot.Rd
man/cluster.id.igraph.Rd
man/get.avr.mut.data.Rd
man/get.avr.mut.plot.Rd
man/get.barplot.errorbar.Rd
man/get.elbow.Rd
man/get.n.node.data.Rd
man/get.n.node.plot.Rd
man/get.seq.distance.Rd
man/get.umap.Rd
man/get.vgu.matrix.Rd
man/no.empty.node.Rd
man/select.top.Rd
man/simulate_repertoire.Rd
man/umap.top.highlight.Rd
man/vae_generate.Rd
vignettes/.DS_Store
vignettes/.gitignore
vignettes/vignette.Rmd
