clonofreq.trans.data: Get information about the clonotype counts grouped by...
In alexyermanos/Echidna: Single Cell Immune Repertoire and Transcriptome Simulation
View source: R/other_functions.R
Description
Dataframe with clonotype counts grouped by transcriptome state(cell type).
Usage
1
clonofreq.trans.data(all.contig.annotations, history, trans.names, top.n)
Arguments
all.contig.annotations
The output dataframe all_contig_annotation from function simulate.repertoire.
history
The dataframe history from simulate output.
trans.names
The names of cell types which are used in transcriptome.switch.prob argument in the simulation.
top.n
The top n abundant clones to be shown in the plot. If missing, all clones will be shown.
alexyermanos/Echidna documentation built on Feb. 13, 2022, 10:29 a.m.
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View source: R/other_functions.R
Description
Dataframe with clonotype counts grouped by transcriptome state(cell type).
Usage
1 | clonofreq.trans.data(all.contig.annotations, history, trans.names, top.n)
|
Arguments
all.contig.annotations |
The output dataframe all_contig_annotation from function simulate.repertoire. |
history |
The dataframe history from simulate output. |
trans.names |
The names of cell types which are used in transcriptome.switch.prob argument in the simulation. |
top.n |
The top n abundant clones to be shown in the plot. If missing, all clones will be shown. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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