umap.top.highlight: Set idents for top abundant clones in Seurat object, get...
In alexyermanos/Echidna: Single Cell Immune Repertoire and Transcriptome Simulation
View source: R/other_functions.R
Description
Set idents for top abundant clones in Seurat object, get ready for highlight the top abundant clones in UMAP.
Usage
1
umap.top.highlight(gex, all.contig.annotations, top.n)
Arguments
gex
output from get.umap function.
all.contig.annotations
The output dataframe all_contig_annotations from simulation.
top.n
The top n abundant clones to be shown in the plot. If missing, all clones will be shown.
alexyermanos/Echidna documentation built on Feb. 13, 2022, 10:29 a.m.
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View source: R/other_functions.R
Description
Set idents for top abundant clones in Seurat object, get ready for highlight the top abundant clones in UMAP.
Usage
1 | umap.top.highlight(gex, all.contig.annotations, top.n)
|
Arguments
gex |
output from get.umap function. |
all.contig.annotations |
The output dataframe all_contig_annotations from simulation. |
top.n |
The top n abundant clones to be shown in the plot. If missing, all clones will be shown. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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