aliafdz/QApckg: Quality assessment for Miseq data derived from viral sequencing

This package provides a set of functions for NGS data processing, quality analysis, filtering and demultiplexing. These functions are designed to be applied in consecutive order on Miseq raw data to obtain a set of intersected haplotypes for each evaluated sample. With these consensus haplotypes different kinds of computations can be made, i.e genotyping, variant calling and quasispecies diversity.

install.packages("remotes")
remotes::install_github("aliafdz/QApckg")