Files in aliafdz/QApckg
Quality assessment for Miseq data derived from viral sequencing
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
QApckg.Rproj
QApckg_0.1.0.pdf
QApckg_0.1.0.tar.gz
R/FiltbyQ30.R
R/GblYield.R
R/PlotInDels.R
R/PoolQCbyPos.R
R/PoolQCbyRead.R
R/QCplot.R
R/QCscores.R
R/R1R2toFLASH.R
R/SaveHaplotypes.R
R/conshaplotypes.R
R/demultiplexMID.R
R/demultiplexPrimer.R
R/executeFLASH.R
R/mclapplyhack.R
R/primermatch.R
README.md
VHBass3_QApckg/reports/AmpliconLengthsPlot.pdf
VHBass3_QApckg/reports/AmpliconLengthsRprt.txt
VHBass3_QApckg/reports/FLASH_barplot.pdf
VHBass3_QApckg/reports/FLASH_report.txt
VHBass3_QApckg/reports/FiltQ30.barplot.pdf
VHBass3_QApckg/reports/FiltQ30_report.txt
VHBass3_QApckg/reports/GapsBarPlots.pdf
VHBass3_QApckg/reports/GlobalYield-SumRprt.txt
VHBass3_QApckg/reports/GlobalYieldBarplots.pdf
VHBass3_QApckg/reports/IntersectBarplots.pdf
VHBass3_QApckg/reports/MA.Intersects-SummRprt.txt
VHBass3_QApckg/reports/MA.Intersects.plots.pdf
VHBass3_QApckg/reports/PoolFiltQCbyPos.VHBASS35X.pdf
VHBass3_QApckg/reports/PoolFiltQCbyPos.VHBASS3PRES1.pdf
VHBass3_QApckg/reports/PoolQCbyPos.VHBASS35X.pdf
VHBass3_QApckg/reports/PoolQCbyPos.VHBASS3PRES1.pdf
VHBass3_QApckg/reports/PoolQCbyRead_VHBASS35X.pdf
VHBass3_QApckg/reports/PoolQCbyRead_VHBASS3PRES1.pdf
VHBass3_QApckg/reports/PoolReadLengths.pdf
VHBass3_QApckg/reports/SplidByMIDs.Rprt.txt
VHBass3_QApckg/reports/SplidByMIDs.barplots.pdf
VHBass3_QApckg/reports/SplitByPrimersOnFlash-hz.pdf
VHBass3_QApckg/reports/SplitByPrimersOnFlash.pdf
VHBass3_QApckg/reports/SplitByPrimersOnFlash.txt
VHBass3_QApckg/reports/SplittedReadsFileTable.txt
VHBass3_QApckg/results/5pHBx_Classif.RData
VHBass3_QApckg/results/BQ43_HBV.1234.1631.AllSamples.HplUPGMATree.pdf
VHBass3_QApckg/results/BQ43_HBV.1234.1631.HplEquivalencies.txt
VHBass3_QApckg/results/BQ43_HBV.2822.3296.AllSamples.HplUPGMATree.pdf
VHBass3_QApckg/results/BQ43_HBV.2822.3296.HplEquivalencies.txt
VHBass3_QApckg/results/FinalCovBoxplots.pdf
VHBass3_QApckg/results/HBV.Genotyping.Rprt.txt
VHBass3_QApckg/results/HBV_1255_1611_GenotypingBarplot.pdf
VHBass3_QApckg/results/HBV_1255_1611_HplGenotyping.pdf
VHBass3_QApckg/results/HBV_1255_1611_HplGenotypingConfidence.pdf
VHBass3_QApckg/results/HBV_1255_1611_HplGenotypingRprt.txt
VHBass3_QApckg/results/HBV_1255_1611_HplGenotyping_SummaryRprt.txt
VHBass3_QApckg/results/HBV_2844_3276_GenotypingBarplot.pdf
VHBass3_QApckg/results/HBV_2844_3276_HplGenotyping.pdf
VHBass3_QApckg/results/HBV_2844_3276_HplGenotypingConfidence.pdf
VHBass3_QApckg/results/HBV_2844_3276_HplGenotypingRprt.txt
VHBass3_QApckg/results/HBV_2844_3276_HplGenotyping_SummaryRprt.txt
VHBass3_QApckg/results/NtFastasSummary.txt
VHBass3_QApckg/results/PreS1_Classif.RData
man/FiltbyQ30.Rd
man/GblYield.Rd
man/PlotInDels.Rd
man/PoolQCbyPos.Rd
man/PoolQCbyRead.Rd
man/QCplot.Rd
man/QCscores.Rd
man/R1R2toFLASH.Rd
man/SaveHaplotypes.Rd
man/conshaplotypes.Rd
man/demultiplexMID.Rd
man/demultiplexprimer.Rd
man/executeFLASH.Rd
man/mclapply.hack.Rd
man/primermatch.Rd
