primermatch: Identfication of primer specific sequences

In aliafdz/QApckg: Quality assessment for Miseq data derived from viral sequencing

Identfication of primer specific sequences

Description

Identifies template specific primer sequences in reads from a single sample and adds primer match results in defined tables.

Usage

primermatch(j, idx, flnms, pool)

Arguments

j	Integer corresponding to the sample (element in idx) to be evaluated.
idx	Vector including the indices of samples that correspond to the evaluated pool.
flnms	Vector including the names of demultiplexed files by MID, with fna extension, corresponding to the evaluated samples.
pool	Character indicating the name of sample pool.

Details

This function is only defined for correct execution of demultiplexPrimer function from the same package, so it cannot be executed individually.

Value

This function requires the result tables named FlTbl, PoolTbl and pr.res that will be filled with the data collected from the evaluated sample. This results will be further evaluated in demultiplexPrimer parent function.

Author(s)

Alicia Aranda

See Also

demultiplexPrimer

aliafdz/QApckg documentation built on June 2, 2022, 10:29 a.m.