R/mammalvirus.R

#' Terrestrial mammals and flaviviruses interaction dataset
#'
#' A dataset containing the incidence of virus on mammals collected by
#' Sotomayor-Bonilla-et-al 2019.
#'
#'@docType data
#'
#'@keywords datasets
#'
#'@format A data frame with 1191 rows and 12 variables:
#' \describe{
#'   \item{reference}{reference paper}
#'   \item{sampling_year}{Year of the sampling}
#'   \item{country}{Country of sample}
#'   \item{diagnostic_test}{Diagnostic test used in the sampling}
#'   \item{diagnostic_test_type}{Type of the diagnostic test used in the sampling}
#'   \item{subclade}{Subclade of the virus sampled}
#'   \item{virus}{Virus detected in the sample}
#'   \item{order}{Order of the mammal sampled}
#'   \item{family}{Family of the mammal sampled}
#'   \item{mammal_species}{Species of the mammal sampled}
#'   \item{individual_tested}{Number of individual mammals tested in the sample}
#'   \item{incidence}{Number of virus positive sampled in the individual tested}
#' }
#'@source \url{https://doi.org/10.1007/s10393-019-01442-2}
#'@example
#' data(mammalvirus)
"mammalvirus"
alrobles/PNASSubmit-Wildlife-susceptibility-to-infectious-diseases-at-global-scales documentation built on Aug. 2, 2022, 5:15 p.m.