sweetDall: Hoeffding's D statistic against every other sample

In amberjoybarton/sweetD: Hoeffding's D Statistic as a Summary Statistic for MA Plots

Description

This function allows you to take one or more log-transformed expression matrices, and calculates Hoeffding's D-statistic for each sample in the matrix against every other sample. This outputs a dataframe with the values off Hoeffding's D for each sample compared to every other sample in each expression matrix.

Usage

sweetDall(...)

Arguments

...	One or more log transformed matrices, with columns corresponding to samples and rows to genes or other features.

Examples

data(expr.raw, expr.batchcorrected, expr.normalised)
sweetDall(expr.raw)
Dstat_results_all = sweetDall(expr.raw, expr.batchcorrected, expr.normalised)

amberjoybarton/sweetD documentation built on Feb. 27, 2021, 3:44 a.m.