sweetDheatmap: Plot Hoeffding's D statistic against every other sample
In amberjoybarton/sweetD: Hoeffding's D Statistic as a Summary Statistic for MA Plots
Description
Usage
Arguments
Examples
Description
This function takes the output of sweetDall, with the values off Hoeffding's D for each sample compared to every other sample in each expression matrix, and gives a heatmap of D statistics.
Usage
1
sweetDheatmap(Dall_output)
Arguments
Dall_output
Output from sweetDall() performed on one or more log transformed matrices, with columns corresponding to samples and rows to genes or other features.
Examples
1
2
3
data(expr.raw, expr.batchcorrected, expr.normalised)
Dstat_results_all = sweetDall(expr.raw, expr.batchcorrected, expr.normalised)
sweetDheatmap(Dstat_results_all)
amberjoybarton/sweetD documentation built on Feb. 27, 2021, 3:44 a.m.
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Description Usage Arguments Examples
Description
This function takes the output of sweetDall, with the values off Hoeffding's D for each sample compared to every other sample in each expression matrix, and gives a heatmap of D statistics.
Usage
1 | sweetDheatmap(Dall_output)
|
Arguments
Dall_output |
Output from sweetDall() performed on one or more log transformed matrices, with columns corresponding to samples and rows to genes or other features. |
Examples
1 2 3 | data(expr.raw, expr.batchcorrected, expr.normalised)
Dstat_results_all = sweetDall(expr.raw, expr.batchcorrected, expr.normalised)
sweetDheatmap(Dstat_results_all)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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