Files in anasrana/spector
Computes a measure for the signal roughnes for genomic sequencing files
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/aux-functions.R
R/full-genome-regions.R
R/gim.R
R/las-limits.R
R/n-reads-bam.R
R/read-coverage.R
R/rm_file_list.R
R/samples.R
R/spector.R
R/spector_qc.R
R/sr-metric.R
R/standardise_regions.R
R/sysdata.rda
README.md
data-raw/baseline.csv
data-raw/giab_hg19.bed
data-raw/giab_hg38.bed
data-raw/las_limits.csv
data-raw/spector-data.R
inst/extdata/basic.bed
inst/extdata/bed_results.bed
inst/extdata/sample1.bam
inst/extdata/sample1.bam.bai
inst/extdata/sample2.bam
inst/extdata/sample2.bam.bai
inst/extdata/sample_id.txt
inst/extdata/sample_id_2.txt
inst/extdata/with_header.bed
man/calc_gim.Rd
man/full_genome_regions.Rd
man/las_status.Rd
man/pipe.Rd
man/read_bed.Rd
man/read_cov.Rd
man/read_par_file.Rd
man/spector.Rd
man/spector_qc.Rd
man/spector_sample.Rd
spector.Rproj
tests/testthat.R
tests/testthat/result_basic-bed.csv
tests/testthat/result_basic-bed_rms.csv
tests/testthat/sample1_chr1_cov.csv
tests/testthat/test-bam.R
tests/testthat/test-read-bed.R
tests/testthat/test-spector.R
vignettes/introduction.Rmd
