read_cov: Read the coverage for regions on one chromosome.

In anasrana/spector: Computes a measure for the signal roughnes for genomic sequencing files

Description

Read the coverage for regions on one chromosome.

Usage

read_cov(f_name, chr, start, end, n_read = NULL)

Arguments

f_name	string. Full path to bam file.
chr	string. Chromosome name, make sure it follows to naming standards in your bam file.
start	integer vector. Starting coordinates for regions to read.
end	integer vector. Starting coordinates for regions to read.
n_read	integer. total number of reads in the bam file.

Value

GRanges object with reads from a given chromosome.

See Also

Other data import functions: full_genome_regions, read_bed, read_par_file

anasrana/spector documentation built on May 14, 2019, 2:36 p.m.