andreamrau/padma: Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis

Use multiple factor analysis to calculate individualized pathway-centric scores of deviation with respect to the sampled population based on multi-omic assays (e.g., RNA-seq, copy number alterations, methylation, etc). Graphical and numerical outputs are provided to identify highly aberrant individuals for a particular pathway of interest, as well as the gene and omics drivers of aberrant multi-omic profiles.

Getting started

Package details

Bioconductor views BioCarta GeneExpression MethylSeq Pathways PrincipalComponent RNASeq Software StatisticalMethod
Maintainer
LicenseGPL (>=3)
Version1.15.1
URL https://github.com/andreamrau/padma
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("andreamrau/padma")
andreamrau/padma documentation built on June 15, 2024, 8:39 a.m.