boxplot_cluster_expr: Boxplot of clustered expression levels
In andreaskapou/BPRMeth: Model higher-order methylation profiles

Description Usage Arguments Value Author(s) See Also Examples

Create a boxplot of clustered gene expression levels which depend on the clustered methylation profiles. Each colour denotes a different cluster.

1	boxplot_cluster_expr(cluster_obj, expr, anno, title = "Expression levels")

`cluster_obj`	The output from `cluster_profiles_vb` or `cluster_profiles_mle` functions.
`expr`	The expression data object.
`anno`	The annotation data object.
`title`	Plot title

A ggplot2 object.

C.A.Kapourani C.A.Kapourani@ed.ac.uk

plot_cluster_profiles, plot_infer_profiles, plot_predicted_expr

# Cluster methylation profiles using 3 RBFs
basis <- create_rbf_object(M = 3)
# Perform clustering
cl_obj <- cluster_profiles_vb(X = encode_met$met, K = 3, model = "binomial",
           basis = basis, vb_max_iter = 5)
# Create plot
g <- boxplot_cluster_expr(cluster_obj = cl_obj, expr = encode_expr,
       anno = encode_met$anno)