API for andreaskapou/BPRMeth
Model higher-order methylation profiles

Global functions
.datatable.aware Man page
BPRMeth Man page
BPRMeth-package Man page
add_func Source code
basis Man page
bernoulli_data Man page
beta_data Man page
betareg_gradient Man page Source code
betareg_log_likelihood Man page Source code
binomial_data Man page
boxplot_cluster_expr Man page Source code
bpr_EM Source code
bpr_EM_fast Source code
bpr_cluster_wrap Man page Source code
bpr_gradient Man page Source code
bpr_log_likelihood Man page Source code
bpr_optim Man page Source code
bpr_optim.default Source code
bpr_optim.list Man page Source code
bpr_optim.matrix Man page Source code
bpr_optim_fast Source code
bpr_optimise Man page
bpr_optimize Man page
bpr_predict_wrap Man page Source code
calculate_errors Source code
cluster_mle Man page
cluster_profile_mle Man page
cluster_profile_vb Man page
cluster_profiles_mle Man page Man page Source code
cluster_profiles_mle_beta Source code
cluster_profiles_mle_bpr Source code
cluster_profiles_mle_gaussian Source code
cluster_profiles_vb Man page Man page Source code
cluster_profiles_vb_bpr Source code
cluster_profiles_vb_gaussian Source code
cluster_vb Man page
create_anno_region Man page Source code
create_basis Man page
create_basis_function Man page
create_fourier_object Man page Source code
create_polynomial_object Man page Source code
create_rbf_object Man page Source code
create_region Man page
create_region_obj Man page
create_region_object Man page Source code
des_mat Man page
des_matrix Man page
design_matrix Man page Man page Source code
design_matrix.default Man page Source code
design_matrix.fourier Man page Source code
design_matrix.polynomial Man page Source code
design_matrix.rbf Man page Source code
designmatrix Man page
discard_bs_noise_reads Source code
discard_chr Source code
do_EM_checks Source code
do_centre_loc Source code
do_checks Source code
em_checks Source code
encode_expr Man page
encode_met Man page
eval_function Man page Source code
eval_function.default Source code
eval_function.fourier Man page Source code
eval_function.polynomial Man page Source code
eval_function.rbf Man page Source code
eval_functions Man page
eval_probit_function Man page Source code
extract_fpkm Source code
extract_gene_name Source code
fourier_basis Source code
gaussian_data Man page
genomic_region Man page
gex_data Man page
gg_theme Source code
gibbs_bpr Source code
infer_profile_gibbs Man page
infer_profile_mle Man page
infer_profile_vb Man page
infer_profiles_gibbs Man page Man page Source code
infer_profiles_mle Man page Man page Source code
infer_profiles_vb Man page Man page Source code
inference_gibbs Man page
inference_mle Man page
inference_vb Man page
inner_predict_model_expr Man page Source code
inner_train_model_expr Man page Source code
log_sum_exp Source code
lr_log_likelihood Man page Source code
met_region Man page
meth_data Man page
minmax_scaling Source code
model_likelihood Man page
model_log_likelihood Man page
nfer_profiles_gibbs_bpr Source code
nfer_profiles_gibbs_bpr.default Source code
nfer_profiles_gibbs_bpr.list Source code
nfer_profiles_gibbs_bpr.matrix Source code
nfer_profiles_mle_beta Source code
nfer_profiles_mle_beta.default Source code
nfer_profiles_mle_beta.list Source code
nfer_profiles_mle_beta.matrix Source code
nfer_profiles_mle_bpr Source code
nfer_profiles_mle_bpr.default Source code
nfer_profiles_mle_bpr.list Source code
nfer_profiles_mle_bpr.matrix Source code
nfer_profiles_mle_gaussian Source code
nfer_profiles_mle_gaussian.default Source code
nfer_profiles_mle_gaussian.list Source code
nfer_profiles_mle_gaussian.matrix Source code
nfer_profiles_vb_bpr Source code
nfer_profiles_vb_bpr.default Source code
nfer_profiles_vb_bpr.list Source code
nfer_profiles_vb_bpr.matrix Source code
nfer_profiles_vb_gaussian Source code
nfer_profiles_vb_gaussian.default Source code
nfer_profiles_vb_gaussian.list Source code
nfer_profiles_vb_gaussian.matrix Source code
obs_log_likelihood Man page
obs_model_likelihood Man page
old_boxplot_cluster_gex Man page Source code
old_bpr_gradient Source code
old_bpr_likelihood Source code
old_plot_cluster_prof Man page Source code
old_plot_fitted_profiles Man page Source code
old_sum_weighted_bpr_grad Source code
old_sum_weighted_bpr_lik Source code
onLoad Source code
parallel_cores Source code
partition_data Source code
plot_cluster_profiles Man page Source code
plot_infer_profiles Man page Source code
plot_predicted_expr Man page Source code
polynomial_basis Source code
pool_bs_seq_rep Man page Source code
predict_expr Man page Source code
predictive_cluster_profile Source code
predictive_infer_profile Source code
preprocess_bs_seq Man page Source code
preprocess_final_HTS_data Man page Source code
process_haib_caltech_wrap Man page Source code
rbf_basis Source code
read_anno Man page Source code
read_bs_bismark_cov Source code
read_bs_encode_haib Man page Source code
read_chrom_size Man page Source code
read_expr Man page Source code
read_met Man page Source code
read_rna_encode_caltech Man page Source code
region_object Man page
sum_weighted_betareg_grad Man page Source code
sum_weighted_betareg_lik Man page Source code
sum_weighted_bpr_grad Man page Source code
sum_weighted_bpr_lik Man page Source code
update_Ez Source code
andreaskapou/BPRMeth documentation built on June 14, 2018, 8:24 p.m.