old_plot_fitted_profiles: (DEPRECATED) Plot the fit of methylation profiles across a...
In andreaskapou/BPRMeth: Model higher-order methylation profiles

Description Usage Arguments Value Author(s) See Also Examples

(DEPRECATED) plot_fitted_profiles is a simple function for plotting the methylation data across a give region, together with the fit of the methylation profiles.

old_plot_fitted_profiles(
  region,
  X,
  fit_prof,
  fit_mean = NULL,
  title = "Gene promoter",
  ...
)

`region`	Promoter region number
`X`	Methylation data observations
`fit_prof`	Fitted profile
`fit_mean`	Fitted mean function
`title`	Title of the plot
`...`	Additional parameters

The figure to be plotted in the device.

C.A.Kapourani C.A.Kapourani@ed.ac.uk

old_plot_cluster_prof

# Fit methylation profiles using 3 RBFs
obs <- meth_data
y   <- gex_data
basis <- create_rbf_object(M = 3)
out   <- bpr_predict_wrap(x = obs, y = y, basis = basis,
                          is_parallel = FALSE, opt_itnmax = 5)

# Create the plot
old_plot_fitted_profiles(region = 16, X = meth_data, fit_prof = out)