MLE.plots.recommend: Recommended LBN-type plot with ISD for fitted MLE (MEE Figure...

In andrew-edwards/sizeSpectra: Fitting Size Spectra to Ecological Data Using Maximum Likelihood

Recommended LBN-type plot with ISD for fitted MLE (MEE Figure 6)

Description

Only valid when x is biomass, since LBN plot calculates the biomass.

Usage

MLE.plots.recommend(
  x,
  b.MLE,
  confVals.MLE,
  hLBNbiom.list = NULL,
  inset = c(0, -0.04),
  mgpVals = c(1.6, 0.5, 0),
  xLim = c(0, 2.7),
  yLim = c(0, 3),
  yBigTicks = 0:3,
  ySmallTicks = c(0.5, 1.5, 2.5)
)

Arguments

x	Raw data, must be body-mass values (else LBN plot is meaningless).
b.MLE	MLE estimate of $b$
confVals.MLE	Confidence interval for estimate of b (two-component vector for bounds of confidence interval)
hLBNbiom.list	Results from LBNbiom.method(x). If NULL then calculate them here.
inset	Inset distance for legend
mgpVals	mpg values
xLim	x-axis limits
yLim	y-axis limits
yBigTicks	Large tick marks for y-axis
ySmallTicks	Small tick marks for y-axis

Value

Panel plot with LBN plot at top and ISD with fitted MLE and confidence intervals at the bottom.

Author(s)

Andrew Edwards

andrew-edwards/sizeSpectra documentation built on June 28, 2023, 7:09 p.m.