get_sample_depths: Get Sample Depths
In andrewGhazi/malacoda: Bayesian Analysis of High-Throughput Genomic Assays

Description Usage Arguments Note Examples

View source: R/traditional_analysis_functions.R

Computes the sum of all barcode counts

1	get_sample_depths(mpra_data, depth_multiplier = 1e+06)

`mpra_data`	a dataframe of MPRA data
`depth_multiplier`	a numeric to divide through the depths to make the numbers more easily interpretable

The depth_multiplier input has no effect on the downstream analysis as it divides out because both RNA and DNA counts are normalized by this same factor. It simply sets the scale of depth factors at an easily-readable range.

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get_sample_depths(umpra_example)
# Data from non-subsampled datasets with typical sequencing depths will typically
# show depth factors larger than this example, in the 10-100 range.