plot_mpra_correlations: Plot MPRA sample correlations
In andrewGhazi/malacoda: Bayesian Analysis of High-Throughput Genomic Assays
Description
Usage
Arguments
Details
Value
Note
Examples
Description
Plot MPRA sample correlations
Usage
1
plot_mpra_correlations(sample_correlations)
Arguments
sample_correlations
a data frame of pairwise sample correlations
Details
This function visualizes the pairwise correlations of count samples
in MPRA data. This can be a useful QC metric - samples should correlate
highly with other samples of the same type (DNA or RNA). If ALL samples
correlate highly with one another, this can indicate DNA contamination in
the RNA libraries.
Value
a ggplot showing the pairwise sample correlations
Note
Get sample_correlations from get_sample_correlations
Examples
1
2
example_correlations = get_sample_correlations(umpra_example)
plot_mpra_correlations(example_correlations)
andrewGhazi/malacoda documentation built on Aug. 2, 2020, 12:54 a.m.
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Description Usage Arguments Details Value Note Examples
Description
Plot MPRA sample correlations
Usage
1 | plot_mpra_correlations(sample_correlations)
|
Arguments
sample_correlations |
a data frame of pairwise sample correlations |
Details
This function visualizes the pairwise correlations of count samples in MPRA data. This can be a useful QC metric - samples should correlate highly with other samples of the same type (DNA or RNA). If ALL samples correlate highly with one another, this can indicate DNA contamination in the RNA libraries.
Value
a ggplot showing the pairwise sample correlations
Note
Get sample_correlations from get_sample_correlations
Examples
1 2 | example_correlations = get_sample_correlations(umpra_example)
plot_mpra_correlations(example_correlations)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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