Description Usage Arguments Details Value Note Examples
Plot MPRA sample correlations
1 | plot_mpra_correlations(sample_correlations)
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sample_correlations |
a data frame of pairwise sample correlations |
This function visualizes the pairwise correlations of count samples in MPRA data. This can be a useful QC metric - samples should correlate highly with other samples of the same type (DNA or RNA). If ALL samples correlate highly with one another, this can indicate DNA contamination in the RNA libraries.
a ggplot showing the pairwise sample correlations
Get sample_correlations
from get_sample_correlations
1 2 | example_correlations = get_sample_correlations(umpra_example)
plot_mpra_correlations(example_correlations)
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