Count barcode abundance, write out the counts of unmatched barcodes, return a data frame of counts of the given barcodes
1 2 3 4 5 6 | count_barcodes_in_fastq(
trimmed_fastq,
barcode_allele_df,
temp_dir,
verbose = TRUE
)
|
trimmed_fastq |
path to a trimmed fastq |
barcode_allele_df |
a data frame giving a mapping between barcodes and alleles |
temp_dir |
a character string giving the path to a directory to use for temporary intermediate files |
verbose |
logical indicating whether or not to print progress messages |
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