chromsizes: Get named vector of chromosome sizes in specified genome...

In andrewparkermorgan/rplasmodium: Dumb Utility Functions for Malaria Genomics

Description

Get named vector of chromosome sizes in specified genome assembly

Usage

chromsizes(genome = "pf3d7", clean_names = FALSE, as_seqinfo = FALSE,
  ...)

chromsizes_3d7(...)

chromsizes_sal1(...)

chromsizes_p01(...)

chromsizes_cM(..., clean_names = FALSE, genome = "pf3d7")

Arguments

genome	identifier for a genome assembly
clean_names	logical; if TRUE, scrub chromosome names like 'Pf3D7_01_v3','Pf3D7_02_v3' to '1','2'
as_seqinfo	logical; if TRUE, return a GenomeInfoDb::Seqinfo object instead of a named vector
...	ignored

Value

a named vector of chromosome lengths in base pairs or (in case of chromsizes_cM()) in centimorgans

andrewparkermorgan/rplasmodium documentation built on May 25, 2019, 6:26 p.m.