factor_chrom: Sanitize chromosome names
In andrewparkermorgan/rplasmodium: Dumb Utility Functions for Malaria Genomics

Convert a vector of chromosome names in some sensible format to "nice" names in karyotype order.

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factor_chrom(x, clean_names = TRUE, genome = "pf3d7", ...)

is_chrom(x, ...)

`x`	a vector containing chromosome identifiers
`clean_names`	logical; if `TRUE`, scrub names like 'Pf3D7_01_v3','Pf3D7_02_v3' to '1','2'
`genome`	identifier for a genome whose chromosome complement determines the levels of this factor
`...`	ignored

A vector blessed as a chromosome by factor_chrom() can be confirmed with is_chrom().

a factor whose levels are the chromosomes in the desired genome, in karyotype order

andrewparkermorgan/rplasmodium documentation built on May 25, 2019, 6:26 p.m.

andrewparkermorgan/rplasmodium index

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