recomb_map_pf3d7: Genetic map for P. falciparum genome

Description Usage Format Source

Description

A genetic map (== recombination map) derived from crossovers reported in Miles et al. (2016), using identity map function (ie. no unobserved double-crossovers). Format follows the *.map format of PLINK and other programs for pedigree and linkage analysis.

Usage

1

Format

A tibble (inherits from data frame) with 4 columns:

chr

chromosome names, as ordered factor (pf3d7 assembly)

marker

dummy marker name, created by concatenating chromosme and position of mid-point of crossover uncertainty interval

cM

genetic position in centimorgans

pos

physical position in base pairs on pf3d7 assembly, 1-based

Source

Miles A et al. (2016) Genome Research 26: 1288-1299. https://doi-org.libproxy.lib.unc.edu/10.1101/gr.203711.115


andrewparkermorgan/rplasmodium documentation built on May 25, 2019, 6:26 p.m.