project: Project future incidence at a location Simulates future...
In annecori/mRIIDSprocessData: Epidemiological forcasting using real-time data

Description Usage Arguments Value Author(s)

Project future incidence at a location Simulates future incidence based on past incidence data at a given set of locations, the Reproduction numbers and the distribution of the serial interval. Runs a single simulation.

1	project(incid, R, si, pij, n_days = 7)

`incid`	A data frame of incidence counts for n locations and t days. Dates run down the rows and locations are across columns.
`R`	either a 1 X n matrix of reproduction numbers for each location or a matrix of n_days X n with R for each time instant and each location for which projection is to be made.
`si`	A vector drawn from serial interval distribution. If the length of the vector is less than the nrow(incid) + n_days, it is padded with 0s.
`pij`	a n x n matrix of probabilities where n is the number of locations.
`n_days`	number of days for which a simulation should be run.